[gmx-users] How to create .pdb files?

[Justin A. Lemkul]

Justin A. Lemkul wrote:
> 
> 
> Joseph Johnson wrote:
>> I have tried to export .pdb files from ChemBio3D Ultra but it does not 
>> do a very good job.  What is the best or simply a good, reliable 
>> method of generating a .pdb file?
> 
> If it is simply a formatting issue, you can fix it yourself using the 
> PDB format guidelines:
> 
> http://www.wwpdb.org/docs.html
> 
> If the software just isn't well-suited to this purpose, I find that the 
> PRODRG server is useful for such purposes.
> 

I forgot to ask - what kind of structures are you trying to export?  Small 
molecules can be handled by PRODRG, but proteins/lipid membranes/nucleic acids 
and such are too large to be supported.

-Justin

> -Justin
> 
>>
>> Thanks for your help :)
>> Casey
>>
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-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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