[gmx-users] MD with bilayer

Mark Abraham Mark.Abraham at anu.edu.au
Mon Nov 9 22:05:41 CET 2009

parthiban at ncbs.res.in wrote:
> Hi
> I have constructed the bilayer with protein molecule in VMD.
> Can any one tell how to start MD from here.

Follow the methods of whichever tutorial you learned from :-)

> the initial step - pdb2gmx is not working for this complex(pdb+membrane)

We're not omniscient... tell us what you did, what you expected, what 
you saw and why you think it was not working :-)


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