[gmx-users] MD with bilayer
itamar.kass at gmail.com
Mon Nov 9 22:15:07 CET 2009
VMD was built to work with NAMD, so the atom names and topologies will not
work with GROMACS. I guess you better go to Peter Tieleman site (
http://moose.bio.ucalgary.ca/) and rad there how to do things.
On Tue, Nov 10, 2009 at 8:05 AM, Mark Abraham <Mark.Abraham at anu.edu.au>wrote:
> parthiban at ncbs.res.in wrote:
>> I have constructed the bilayer with protein molecule in VMD.
>> Can any one tell how to start MD from here.
> Follow the methods of whichever tutorial you learned from :-)
> the initial step - pdb2gmx is not working for this complex(pdb+membrane)
> We're not omniscient... tell us what you did, what you expected, what you
> saw and why you think it was not working :-)
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