[gmx-users] Adding ions

Arden Perkins perkina2 at eou.edu
Tue Nov 17 00:56:30 CET 2009

I am an undergraduate student and I am still learning to use GROMACS. When I
add my ions to the solution (using genion) by the procedure described in the
funnel web spider tutorial the .gro and .top files do not match. I tried
subtracting solvent molecules but they still dont match and I can't
continue. What am I doing wrong?

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