[gmx-users] pdb2gmx : treat CL as C

Chandan Choudhury iitdckc at gmail.com
Tue Nov 17 04:41:13 CET 2009


The atom type C is for Carbon and for chlorine is Cl. So, substitute
Chlorine's atom type with Cl.


On Tue, Nov 17, 2009 at 9:04 AM, Nilesh Dhumal <ndhumal at andrew.cmu.edu>wrote:

> Hello,
> My system is having chlorin atoms. Duing pdb2gmx it treat Chlorne atoms as
> carbon.
> Can you tell me where is the problem. Is there any prblem in my pdb file
> Nilesh
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Chandan kumar Choudhury
NCL, Pune
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