[gmx-users] RMSD Vs Residue no by Grace

Justin A. Lemkul jalemkul at vt.edu
Sun Nov 29 17:10:51 CET 2009

rituraj purohit wrote:
> Dear friends,
> I am able to plot,  RMSD between Time (ps) by following command by using 
> g_rms -s md.tpr -f md.xtc   
> xmgrace  rmsd.xvg
> How we can I plot a graph betwwen RMSD and residue no ..??
> My aim is to find RMSD at each residues. How i can do that?

g_rmsf -res -od


> looking forward for u r important suggestions.
> Thanking you
> Regards
> Rituraj 


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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