[gmx-users] Re: topology does not match

Justin A. Lemkul jalemkul at vt.edu
Tue Mar 2 12:50:41 CET 2010

Please keep all Gromacs-related correspondence on the gmx-users list.  I am not 
a private help service.  Your question has been asked and answered dozens, if 
not hundreds, of times and you should be able to find a solution in the list 
archive or on the Errors page:



lena farnandis wrote:
> Dear sir,
>  suffer from same one  problem . when i was run drug enzyme MD. so how i 
> can solve this problem.
> gromacs error as follows
> Fatal error:
> number of coordinates in coordinate file (trp.pdb, 169092)
>              does not match topology (topology.top, 169071)


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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