March 2010 Archives by date
      
      Starting: Mon Mar  1 01:11:06 CET 2010
         Ending: Wed Mar 31 23:50:12 CEST 2010
         Messages: 710
     
- [gmx-users] Anisotropic pressure control
 
Dallas B. Warren
 - [gmx-users] Position restrained dynamics crash
 
sukesh chandra gain
 - [gmx-users] Please help me with ACPYPI
 
TRANG NGUYEN
 - [gmx-users] Constraining periodic cell
 
David Chalmers
 - [gmx-users] g_sas
 
pawan raghav
 - [gmx-users] Constraining periodic cell
 
David van der Spoel
 - [gmx-users] g_sas
 
Tsjerk Wassenaar
 - [gmx-users] g_sas
 
Mark Abraham
 - [gmx-users] NVE of water
 
Ran Friedman
 - [gmx-users] NVE of water
 
Berk Hess
 - [gmx-users] NVE of water
 
Andrea
 - [gmx-users] Constraining periodic cell
 
David Chalmers
 - [gmx-users] Constraining periodic cell
 
David van der Spoel
 - [gmx-users] Constraining periodic cell
 
Berk Hess
 - [gmx-users] RE: Anisotropic pressure control 
 
Matteus Lindgren
 - [gmx-users] Continuous trajectory from trjconv?
 
Pablo Englebienne
 - [gmx-users] Continuous trajectory from trjconv?
 
Tsjerk Wassenaar
 - [gmx-users] Re: Continuous trajectory from trjconv?
 
Pablo Englebienne
 - [gmx-users] RE: Anisotropic pressure control
 
Justin A. Lemkul
 - [gmx-users] NVE of water
 
Berk Hess
 - [gmx-users] NVE of water
 
Justin A. Lemkul
 - [gmx-users] NVE of water
 
Ran Friedman
 - [gmx-users] NVE of water
 
Mark Abraham
 - [gmx-users] NVE of water
 
Ran Friedman
 - [gmx-users] NVE of water
 
Berk Hess
 - [gmx-users] Temperature Coupling and Coupling-Groups
 
shayamra at post.tau.ac.il
 - [gmx-users] Temperature Coupling and Coupling-Groups
 
Justin A. Lemkul
 - [gmx-users] NVE of water
 
Ran Friedman
 - [gmx-users] Temperature Coupling and Coupling-Groups
 
shayamra at post.tau.ac.il
 - [gmx-users] Temperature Coupling and Coupling-Groups
 
David van der Spoel
 - [gmx-users] Temperature Coupling and Coupling-Groups
 
Justin A. Lemkul
 - [gmx-users] How to add a new non-bonded interaction into Gromacs
 
Tandia, Adama
 - [gmx-users] correlation function 'time value' ?
 
Ramachandran G
 - [gmx-users] Re: Choice of value of rlist, rvdw and rcoulomb
 
Lum Nforbi
 - [gmx-users] Re: Choice of value of rlist, rvdw and rcoulomb
 
Justin A. Lemkul
 - [gmx-users] g_cluster
 
ROHIT MALSHE
 - SV: [gmx-users] Order parameter for unsaturated lipid chain in UAmodel
 
Tim Sirk
 - SV: [gmx-users] Order parameter for unsaturated lipid chain in UAmodel
 
Tim Sirk
 - [gmx-users] How to add a new non-bonded interaction into Gromacs
 
Mark Abraham
 - [gmx-users] g_cluster
 
David van der Spoel
 - [gmx-users] Re: topology does not match
 
Justin A. Lemkul
 - [gmx-users] parallel
 
Gavin Melaugh
 - [gmx-users] parallel
 
Mark Abraham
 - [gmx-users] g_nmeig_d error: can't allocate region
 
sarbani chattopadhyay
 - [gmx-users] g_nmeig_d error: can't allocate region
 
Berk Hess
 - [gmx-users] Re: Minimizing a structure having a heteroatom
 
bharat gupta
 - [gmx-users] Re: Minimizing a structure having a heteroatom
 
Mark Abraham
 - [gmx-users] gromacs memory usage
 
Amit Choubey
 - [gmx-users] problem with the size of freeze groups
 
jampani srinivas
 - [gmx-users] gromacs memory usage
 
Mark Abraham
 - [gmx-users] gromacs memory usage
 
Amit Choubey
 - [gmx-users] gromacs memory usage
 
Tsjerk Wassenaar
 - [gmx-users] gromacs memory usage
 
Roland Schulz
 - [gmx-users] gromacs memory usage
 
Amit Choubey
 - [gmx-users] gromacs memory usage
 
Roland Schulz
 - [gmx-users] gromacs memory usage
 
Amit Choubey
 - [gmx-users] gromacs memory usage
 
Roland Schulz
 - [gmx-users] problem with the size of freeze groups
 
Berk Hess
 - [gmx-users] gromacs memory usage
 
Amit Choubey
 - [gmx-users] parallel simulations
 
Gavin Melaugh
 - [gmx-users] gromacs memory usage
 
Roland Schulz
 - [gmx-users] GPU GROMACS
 
Jack Shultz
 - [gmx-users] parallel simulations
 
Gavin Melaugh
 - [gmx-users] NVT simulation and mdp file
 
teklebrh at ualberta.ca
 - [gmx-users] Problems with parallel run
 
Gavin Melaugh
 - [gmx-users] problem with the size of freeze groups
 
jampani srinivas
 - [gmx-users] NVT simulation and mdp file
 
Justin A. Lemkul
 - [gmx-users] Problems with parallel run
 
Oliver Stueker
 - [gmx-users] ethanol bond types
 
nishap.patel at utoronto.ca
 - [gmx-users] Problems with parallel run
 
Gavin Melaugh
 - [gmx-users] ethanol bond types
 
David van der Spoel
 - [gmx-users] Re: GROMACS PME  on BLUEGENE
 
Mark Abraham
 - [gmx-users] External forces
 
ROHIT MALSHE
 - [gmx-users] External forces
 
Justin A. Lemkul
 - [gmx-users] NVT simulation and mdp file
 
Justin A. Lemkul
 - [gmx-users] gromacs memory usage
 
Amit Choubey
 - [gmx-users] g_mindist periodic boundary condition
 
Dian Jiao
 - [gmx-users] gromacs memory usage
 
Roland Schulz
 - [gmx-users] g_mindist periodic boundary condition
 
Mark Abraham
 - [gmx-users] gromacs memory usage
 
Mark Abraham
 - [gmx-users] g_mindist periodic boundary condition
 
Dian Jiao
 - [gmx-users] g_mindist periodic boundary condition
 
Tsjerk Wassenaar
 - [gmx-users] gromacs memory usage
 
Alexey Shvetsov
 - Re: RE: [gmx-users] g_nmeig_d error: can't allocate region
 
sarbani chattopadhyay
 - [gmx-users] g_mindist periodic boundary condition
 
Mark Abraham
 - [gmx-users] harmonic restraints
 
Ajeeta kaushiki
 - [gmx-users] harmonic restraints
 
Mark Abraham
 - [gmx-users] GPU GROMACS
 
Berk Hess
 - [gmx-users] harmonic restraints
 
XAvier Periole
 - [gmx-users] Multiprotein lipid bilayer
 
ram bio
 - [gmx-users] Multiprotein lipid bilayer
 
Justin A. Lemkul
 - [gmx-users] Multiprotein lipid bilayer
 
ram bio
 - [gmx-users] Multiprotein lipid bilayer
 
Justin A. Lemkul
 - [gmx-users] Multiprotein lipid bilayer
 
ram bio
 - [gmx-users] ethanol bond types
 
nishap.patel at utoronto.ca
 - [gmx-users] topol.top
 
Zuzana Benkova
 - [gmx-users] g_mindist periodic boundary condition
 
Dian Jiao
 - [gmx-users] topol.top
 
Zuzana Benkova
 - [gmx-users] g_mindist periodic boundary condition
 
Tsjerk Wassenaar
 - [gmx-users] g_mindist periodic boundary condition
 
Dian Jiao
 - [gmx-users] topol.top
 
Mark Abraham
 - [gmx-users] NVT simulation and mdp file
 
Justin A. Lemkul
 - [gmx-users] ethanol bond types
 
Dallas B. Warren
 - [gmx-users] NVT simulation and mdp file
 
teklebrh at ualberta.ca
 - [gmx-users] NVT simulation and mdp file
 
Justin A. Lemkul
 - [gmx-users] topol.top
 
Zuzana Benkova
 - [gmx-users] NVT simulation and mdp file
 
teklebrh at ualberta.ca
 - [gmx-users] NVT simulation and mdp file
 
Justin A. Lemkul
 - [gmx-users] topol.top
 
Zuzana Benkova
 - [gmx-users] gromacs memory usage
 
Amit Choubey
 - [gmx-users] diffusion coefficient of oxygen molecule
 
Sunil Thapa
 - [gmx-users] diffusion coefficient of oxygen molecule
 
Erik Marklund
 - [gmx-users] diffusion coefficient of oxygen molecule
 
Amit Choubey
 - [gmx-users] Turn-off water optimisation
 
Thomas Schlesier
 - [gmx-users] Turn-off water optimisation
 
Berk Hess
 - [gmx-users] Re: diffusion coefficient of oxygen molecule
 
Vitaly V. Chaban
 - [gmx-users] Turn-off water optimisation
 
Thomas Schlesier
 - [gmx-users] Turn-off water optimisation
 
Berk Hess
 - [gmx-users] Turn-off water optimisation
 
Ran Friedman
 - [gmx-users] pdb & gro files
 
Carla Jamous
 - [gmx-users] pdb & gro files
 
Andrea
 - [gmx-users] Turn-off water optimisation
 
Thomas Schlesier
 - [gmx-users] Turn-off water optimisation
 
Thomas Schlesier
 - [gmx-users] NVT simulation and mdp file
 
teklebrh at ualberta.ca
 - [gmx-users] NVT simulation and mdp file
 
Justin A. Lemkul
 - [gmx-users] Gromacs 4.0.6 installation error
 
Dian Jiao
 - [gmx-users] Gromacs 4.0.6 installation error
 
Justin A. Lemkul
 - [gmx-users] Gromacs 4.0.6 installation error
 
Dian Jiao
 - [gmx-users] Gromacs 4.0.6 installation error
 
Justin A. Lemkul
 - [gmx-users] isopropanol parameters?
 
Jose Borreguero
 - [gmx-users] isopropanol parameters?
 
David van der Spoel
 - [gmx-users] problem with icc compiler
 
Thomas Schlesier
 - [gmx-users] isopropanol parameters?
 
Jose Borreguero
 - [gmx-users] Gromacs 4.0.6 installation error
 
Mark Abraham
 - [gmx-users] pdb & gro files
 
Mark Abraham
 - [gmx-users] Gromacs 4.0.6 installation error
 
Dian Jiao
 - [gmx-users] Calculating Binding Affinity between Protein and Ligand	using FEP
 
sunita gupta
 - [gmx-users] Calculating Binding Affinity between Protein and	Ligand	using FEP
 
Justin A. Lemkul
 - [gmx-users] Force between groups
 
Michael McGovern
 - [gmx-users] Force between groups
 
Mark Abraham
 - [gmx-users] Fwd: pdb2gmx command
 
bharat gupta
 - [gmx-users] Fwd: pdb2gmx command
 
David van der Spoel
 - [gmx-users] energy minimization
 
shahab shariati
 - [gmx-users] energy minimization
 
Justin A. Lemkul
 - [gmx-users] Re: pdb2gmx command
 
bharat gupta
 - [gmx-users] Re: pdb2gmx command
 
Justin A. Lemkul
 - [gmx-users] Free Energy Calculations
 
jorge_quintero at ciencias.uis.edu.co
 - [gmx-users] Free Energy Calculations
 
jorge_quintero at ciencias.uis.edu.co
 - [gmx-users] Subtraction of  xpm files
 
Itamar Kass
 - [gmx-users] problem with interaction energy calculated by g_energy
 
Qiong Zhang
 - [gmx-users] g_rms warning
 
Carla Jamous
 - [gmx-users] g_rms warning
 
Tsjerk Wassenaar
 - [gmx-users] mdrun_d not running in parallel
 
sarbani chattopadhyay
 - [gmx-users] Re: AMBER force fields for ATP
 
Thomas Piggot
 - [gmx-users] Subtraction of  xpm files
 
Justin A. Lemkul
 - [gmx-users] mdrun_d not running in parallel
 
Justin A. Lemkul
 - [gmx-users] intrinsic viscosity
 
cesteban at unsl.edu.ar
 - [gmx-users] large number of molecules
 
ksm tprk
 - [gmx-users] large number of molecules
 
Dallas B. Warren
 - [gmx-users] mdrun_d not running in parallel
 
Mark Abraham
 - [gmx-users] reading xtc,trr and edr files
 
Paymon Pirzadeh
 - [gmx-users] intrinsic viscosity
 
Mark Abraham
 - [gmx-users] reading xtc,trr and edr files
 
Mark Abraham
 - [gmx-users] problem with interaction energy calculated by g_energy
 
Mark Abraham
 - [gmx-users] large number of molecules
 
ksm tprk
 - [gmx-users] large number of molecules
 
Justin A. Lemkul
 - [gmx-users] large number of molecules
 
Justin A. Lemkul
 - [gmx-users] large number of molecules
 
Justin A. Lemkul
 - [gmx-users] large number of molecules
 
Oliver Stueker
 - [gmx-users] g_mindist output
 
Dian Jiao
 - [gmx-users] g_mindist output
 
Justin A. Lemkul
 - [gmx-users] g_mindist output
 
Dian Jiao
 - [gmx-users] Re: mdrun_d not running in parallel
 
Sarath Kumar
 - [gmx-users] Re: mdrun_d not running in parallel
 
Mark Abraham
 - [gmx-users] g_mindist output
 
Mark Abraham
 - [gmx-users] intrinsic viscosity
 
David van der Spoel
 - [gmx-users] External Force and Box Size
 
David van der Spoel
 - [gmx-users] Re:problem with interaction energy calculated by	g_energy
 
Qiong Zhang
 - [gmx-users] External Force and Box Size
 
Archana S Achalere
 - [gmx-users] rdf problem
 
Antonia V.
 - [gmx-users] Re:problem with interaction energy calculated by	g_energy
 
Qiong Zhang
 - [gmx-users] rdf problem
 
Erik Marklund
 - [gmx-users] rdf problem
 
Antonia V.
 - [gmx-users] Re:problem with interaction energy calculated by	g_energy
 
Qiong Zhang
 - [gmx-users] center peptide in simulation box
 
politr at fh.huji.ac.il
 - [gmx-users] Re:problem with interaction energy calculated by	g_energy
 
Mark Abraham
 - [gmx-users] center peptide in simulation box
 
Mark Abraham
 - [gmx-users] inaccuracy in g_dipoles log
 
Dmitri Dubov
 - [gmx-users] g_dist output
 
John Shultz
 - [gmx-users] inaccuracy in g_dipoles log
 
Berk Hess
 - [gmx-users] g_dist output
 
Justin A. Lemkul
 - [gmx-users] Re: problem with icc compiler
 
Thomas Schlesier
 - [gmx-users] g_dist output
 
John Shultz
 - [gmx-users] g_dist output
 
Justin A. Lemkul
 - [gmx-users] Using trjcat to subdivide a trajectory into two trajectories (depending on a criterion)
 
Christian Seifert
 - [gmx-users] g_dist output
 
John Shultz
 - [gmx-users] g_dist output
 
Justin A. Lemkul
 - [gmx-users] g_dist output
 
John Shultz
 - [gmx-users] g_dist output
 
Justin A. Lemkul
 - [gmx-users] local destabilization of bilayer
 
afsaneh maleki
 - [gmx-users] g_dist output
 
John Shultz
 - [gmx-users] local destabilization of bilayer
 
Justin A. Lemkul
 - [gmx-users] local destabilization of bilayer
 
afsaneh maleki
 - [gmx-users] local destabilization of bilayer
 
Justin A. Lemkul
 - [gmx-users] Using trjcat to subdivide a trajectory into two	trajectories (depending on a criterion)
 
Berk Hess
 - [gmx-users] large number of molecules
 
ksm tprk
 - [gmx-users] g_dist and vsites
 
Joe Joe
 - [gmx-users] large number of molecules
 
Justin A. Lemkul
 - [gmx-users] g_dist and vsites
 
David van der Spoel
 - [gmx-users] g_dist and vsites
 
Joe Joe
 - [gmx-users] g_dist and vsites
 
Joe Joe
 - [gmx-users] g_dist and vsites
 
David van der Spoel
 - [gmx-users] g_dist and vsites
 
Joe Joe
 - [gmx-users] trjcat and trjconv
 
Chih-Ying Lin
 - [gmx-users] trjcat and trjconv
 
Justin A. Lemkul
 - [gmx-users] g_dist and vsites
 
Joe Joe
 - [gmx-users] g_dist and vsites
 
Joe Joe
 - [gmx-users] g_dist and vsites
 
David van der Spoel
 - [gmx-users] g_dist and vsites
 
Joe Joe
 - [gmx-users] On the new web site,	how does one make a user contribution?
 
Bruce D. Ray
 - [gmx-users] Re:problem with interaction energy calculated by	g_energy
 
Qiong Zhang
 - [gmx-users] On the new web site,	how does one make a user contribution?
 
Justin A. Lemkul
 - [gmx-users] Re:problem with interaction energy calculated by	g_energy
 
Mark Abraham
 - [gmx-users] Re: problem with icc compiler
 
Mark Abraham
 - [gmx-users] editconf/genbox: molecular complex outside simulation	box
 
durmaz at zib.de
 - [gmx-users] editconf/genbox: molecular complex outside simulation	box
 
Justin A. Lemkul
 - [gmx-users] center peptide in simulation box
 
Maurício Menegatti Rigo
 - [gmx-users] On the new web site,	how does one make a user contribution?
 
Rossen Apostolov
 - [gmx-users] Re:problem with interaction energy calculated by	g_energy
 
Qiong Zhang
 - [gmx-users] Re: gmx-users Digest, Vol 71, Issue 37
 
sunita gupta
 - [gmx-users] editconf/genbox: molecular complex outside simulation	box
 
vedat durmaz
 - [gmx-users] Re: gmx-users Digest, Vol 71, Issue 37 (Calculating Binding Affinity between Protein and Ligand using FEP)
 
Justin A. Lemkul
 - [gmx-users] diffusion coefficient of oxygen
 
Sunil Thapa
 - [gmx-users] diffusion coefficient of oxygen
 
Justin A. Lemkul
 - [gmx-users] diffusion coefficient of oxygen
 
Berk Hess
 - [gmx-users] problems with non pbc simulations in parallel
 
Gavin Melaugh
 - [gmx-users] problems with non pbc simulations in parallel
 
Maurício Menegatti Rigo
 - [gmx-users] problems with non pbc simulations in parallel
 
Gavin Melaugh
 - [gmx-users] problems with non pbc simulations in parallel
 
Maurício Menegatti Rigo
 - [gmx-users] rdf problem
 
Antonia V.
 - [gmx-users] simulating several proteins
 
Cristiano De Michele
 - [gmx-users] simulating several proteins
 
Mark Abraham
 - [gmx-users] simulating several proteins
 
Cristiano De Michele
 - [gmx-users] problems with non pbc simulations in parallel
 
Berk Hess
 - [gmx-users] problem with icc compiler
 
Thomas Schlesier
 - [gmx-users] problems with non pbc simulations in parallel
 
Gavin Melaugh
 - [gmx-users] protein in dppc
 
edmund lee
 - [gmx-users] protein in dppc
 
Justin A. Lemkul
 - [gmx-users] simulating several proteins
 
Justin A. Lemkul
 - [gmx-users] g_dist and vsites
 
Joe Joe
 - [gmx-users] topolbuild 1.3,	revision to topolbuild that incorporates OPLS-AA support
 
Bruce D. Ray
 - [gmx-users] On the new web site,	how does one make a user contribution?
 
Bruce D. Ray
 - [gmx-users] On the new web site,	how does one make a user contribution?
 
Bruce D. Ray
 - [gmx-users] topolbuild 1.3, revision to topolbuild that 	incorporates OPLS-AA support
 
Joe Joe
 - [gmx-users] topolbuild 1.3,	revision to topolbuild that  incorporates OPLS-AA support
 
Bruce D. Ray
 - [gmx-users] Steered MD: Gromacs 4.0
 
Matthew L. Danielson 
 - [gmx-users] Steered MD: Gromacs 4.0
 
Justin A. Lemkul
 - [gmx-users] Steered MD: Gromacs 4.0
 
chris.neale at utoronto.ca
 - [gmx-users] problem with icc compiler
 
Mark Abraham
 - [gmx-users] rdf problem
 
Dallas B. Warren
 - [gmx-users] huge field.xvg output
 
Dmitri Dubov
 - [gmx-users] problem with icc compiler
 
Erik Brandt
 - [gmx-users] huge field.xvg output
 
Berk Hess
 - [gmx-users] simulating several proteins
 
Cristiano De Michele
 - [gmx-users] Re: problem with icc compiler
 
Thomas Schlesier
 - [gmx-users] Re: problem with icc compiler
 
Berk Hess
 - [gmx-users] Brownian Dynamics - Tabulated Potential
 
Jun Soo Kim
 - [gmx-users] defining value in the mdp file
 
XAvier Periole
 - [gmx-users] Brownian Dynamics - Tabulated Potential
 
Berk Hess
 - [gmx-users] defining value in the mdp file
 
Berk Hess
 - [gmx-users] defining value in the mdp file
 
XAvier Periole
 - [gmx-users] Brownian Dynamics - Tabulated Potential
 
Jun Soo Kim
 - [gmx-users] NPT MD Run Problem
 
teklebrh at ualberta.ca
 - [gmx-users] waterbox
 
nishap.patel at utoronto.ca
 - [gmx-users] g_order 4.0.7
 
Jayeeta Ghosh
 - [gmx-users] Re: NPT MD Run Problem
 
Justin A. Lemkul
 - [gmx-users] waterbox
 
Justin A. Lemkul
 - [gmx-users] g_order 4.0.7
 
Justin A. Lemkul
 - [gmx-users] waterbox
 
nishap.patel at utoronto.ca
 - [gmx-users] Re: NPT MD Run Problem
 
teklebrh at ualberta.ca
 - [gmx-users] waterbox
 
Justin A. Lemkul
 - [gmx-users] g_order 4.0.7
 
Jayeeta Ghosh
 - [gmx-users] g_order 4.0.7
 
Justin A. Lemkul
 - [gmx-users] Re: NPT MD Run Problem
 
Justin A. Lemkul
 - [gmx-users] Problems with umbrella sampling
 
Jennifer Casey
 - [gmx-users] Problems with umbrella sampling
 
Berk Hess
 - [gmx-users] Re: Problems with umbrella sampling
 
Thomas Schlesier
 - [gmx-users] Regarding defining termini in new rtp entry
 
Joe Joe
 - [gmx-users] Regarding defining termini in new rtp entry
 
Justin A. Lemkul
 - [gmx-users] Regarding defining termini in new rtp entry
 
Tsjerk Wassenaar
 - [gmx-users] Regarding defining termini in new rtp entry
 
Joe Joe
 - [gmx-users] Fail to reproduce shifted VDW
 
吴鹏
 - [gmx-users] Energy per residue
 
afsaneh maleki
 - [gmx-users] problem with using pdb2gmx on a single amino acid
 
Joe Joe
 - [gmx-users] problem with using pdb2gmx on a single amino acid
 
Justin A. Lemkul
 - [gmx-users] Energy per residue
 
Justin A. Lemkul
 - [gmx-users] Energy per residue
 
afsaneh maleki
 - [gmx-users] Energy per residue
 
Justin A. Lemkul
 - [gmx-users] mix berger ff with opls 
 
BIN ZHANG
 - [gmx-users] 2D NPT simulations
 
Sai Pooja
 - [gmx-users] mix berger ff with opls
 
chris.neale at utoronto.ca
 - [gmx-users] g_hbond
 
shahab shariati
 - [gmx-users] g_hbond
 
David van der Spoel
 - [gmx-users] LIE energy values for dimers
 
jorge_quintero at ciencias.uis.edu.co
 - [gmx-users] LIE energy values for dimers
 
David van der Spoel
 - [gmx-users] LIE energy values for dimers
 
jorge_quintero at ciencias.uis.edu.co
 - [gmx-users] free energy calculations for two ligands
 
Sai Kumar Ramadugu
 - [gmx-users] cross-correlations as a function of interatomic distance
 
shahab shariati
 - [gmx-users] rmsf question
 
Andrei Neamtu
 - [gmx-users] rmsf question
 
Mark Abraham
 - [gmx-users] free energy
 
afsaneh maleki
 - [gmx-users] Re: How to control the density
 
teklebrh at ualberta.ca
 - [gmx-users] free energy
 
Justin A. Lemkul
 - [gmx-users] Re: How to control the density
 
Justin A. Lemkul
 - [gmx-users] mix berger ff with opls
 
BIN ZHANG
 - [gmx-users] Binding energy for two proteins
 
jorge_quintero at ciencias.uis.edu.co
 - [gmx-users] Binding energy for two proteins
 
Justin A. Lemkul
 - [gmx-users] rmsf question
 
Andrei Neamtu
 - [gmx-users] rmsf question
 
Tsjerk Wassenaar
 - [gmx-users] rmsf question
 
Mark Abraham
 - [gmx-users] mix berger ff with opls
 
Marc Ferdinand Lensink
 - [gmx-users] gen_vel error
 
Carla Jamous
 - [gmx-users] gen_vel error
 
Justin A. Lemkul
 - [gmx-users] gen_vel error
 
Mark Abraham
 - [gmx-users] test particle insertion with PME
 
Schneck at uni-heidelberg.de
 - [gmx-users] test particle insertion with PME
 
Berk Hess
 - [gmx-users] mix berger ff with opls
 
chris.neale at utoronto.ca
 - [gmx-users] SiO2
 
ROHIT MALSHE
 - [gmx-users] g_wham error
 
Gard Nelson
 - [gmx-users] g_wham error
 
Justin A. Lemkul
 - [gmx-users] cross-correlations as a function of interatomic distance
 
shahab shariati
 - [gmx-users] cross-correlations as a function of interatomic	distance
 
Mark Abraham
 - [gmx-users] rmsf question
 
Andrei Neamtu
 - [gmx-users] oxydiffusion
 
Sunil Thapa
 - [gmx-users] oxydiff
 
Sunil Thapa
 - [gmx-users] rmsf question
 
XAvier Periole
 - [gmx-users] rmsf question
 
Mark Abraham
 - [gmx-users] rmsf question
 
XAvier Periole
 - [gmx-users] rmsf question
 
Tsjerk Wassenaar
 - [gmx-users] cross-correlations as a function of interatomic 	distance
 
Tsjerk Wassenaar
 - [gmx-users] Thickness
 
afsaneh maleki
 - [gmx-users] Thickness
 
Justin A. Lemkul
 - [gmx-users] g_rdf
 
politr at fh.huji.ac.il
 - [gmx-users] implicit solvent
 
milad ekramnia
 - [gmx-users] g_rdf
 
Justin A. Lemkul
 - [gmx-users] g_rdf
 
Justin A. Lemkul
 - [gmx-users] FEP dEkin/dlambda dG/dl constr. values continuously	coming out 0.00000e+00
 
sunita gupta
 - [gmx-users] mix berger ff with opls
 
BIN ZHANG
 - [gmx-users] FEP dEkin/dlambda dG/dl constr. values continuously	coming out 0.00000e+00
 
Sander Pronk
 - [gmx-users] Gromacs website
 
Justin A. Lemkul
 - [gmx-users] g_wham error
 
Gard Nelson
 - [gmx-users] g_wham error
 
Justin A. Lemkul
 - [gmx-users] g_wham error
 
Justin A. Lemkul
 - [gmx-users] density vs time
 
nishap.patel at utoronto.ca
 - [gmx-users] density vs time
 
Justin A. Lemkul
 - [gmx-users] density vs time
 
Dallas B. Warren
 - [gmx-users] density vs time
 
Justin A. Lemkul
 - [gmx-users] density vs time
 
nishap.patel at utoronto.ca
 - [gmx-users] density vs time
 
Justin A. Lemkul
 - [gmx-users] implcit solvent
 
milad ekramnia
 - [gmx-users] Re: density vs time
 
Vitaly V. Chaban
 - [gmx-users] gromacs 4.0 on CRAY-XT4
 
BIN ZHANG
 - [gmx-users] gromacs 4.0 on CRAY-XT4
 
Mark Abraham
 - [gmx-users] gromacs 4.0 on CRAY-XT4
 
BIN ZHANG
 - [gmx-users] gromacs 4.0 on CRAY-XT4
 
Mark Abraham
 - [gmx-users] gromacs 4.0 on CRAY-XT4
 
Roland Schulz
 - [gmx-users] implcit solvent
 
Roland Schulz
 - [gmx-users] Simultaing protein, water and lipid together
 
radhika jaswal
 - [gmx-users] exclusions for a specific model
 
Cristiano De Michele
 - [gmx-users] exclusions for a specific model
 
Mark Abraham
 - [gmx-users] Simultaing protein, water and lipid together
 
Justin A. Lemkul
 - [gmx-users] Extending simulations
 
Carla Jamous
 - [gmx-users] Extending simulations
 
Milan Melichercik
 - [gmx-users] Extending simulations
 
Justin A. Lemkul
 - [gmx-users] Re: density vs time
 
nishap.patel at utoronto.ca
 - [gmx-users] Re:density vs time
 
Vitaly V. Chaban
 - [gmx-users] MD localized in the active site
 
Anna Marabotti
 - [gmx-users] g_hbond output
 
vedat durmaz
 - [gmx-users] g_hbond output
 
David van der Spoel
 - [gmx-users] rmsf question
 
Andrei Neamtu
 - [gmx-users] gromacs 4.0 on CRAY-XT4
 
BIN ZHANG
 - [gmx-users] gromacs 4.0 on CRAY-XT4
 
Roland Schulz
 - [gmx-users] Distance for contacts of 0.6 nm
 
Stefan Hoorman
 - [gmx-users] Distance for contacts of 0.6 nm
 
David van der Spoel
 - [gmx-users] gromacs 4.0 on CRAY-XT4
 
BIN ZHANG
 - [gmx-users] MD localized in the active site
 
Erik Marklund
 - [gmx-users] MD localized in the active site
 
Justin A. Lemkul
 - [gmx-users] MD localized in the active site
 
Tsjerk Wassenaar
 - [gmx-users] problem with the size of freeze groups
 
jampani srinivas
 - [gmx-users] about g_sas analysis
 
supti mukherjee
 - [gmx-users] about g_sas analysis
 
Milan Melichercik
 - [gmx-users] about g_sas analysis
 
Tsjerk Wassenaar
 - [gmx-users] query regarding normal mode analysis
 
sarbani chattopadhyay
 - [gmx-users] query regarding normal mode analysis
 
sarbani chattopadhyay
 - [gmx-users] Re: script to constraint distance between ligand and	protein
 
David Mobley
 - [gmx-users] Re: g_desort
 
chris.neale at utoronto.ca
 - [gmx-users] charge group assignment with AMBER parameters
 
Jacob Spooner
 - [gmx-users] g_covar -ref
 
vijaya subramanian
 - [gmx-users] g_covar -ref
 
vijaya subramanian
 - [gmx-users] charge group assignment with AMBER parameters
 
Justin A. Lemkul
 - [gmx-users] g_covar -ref
 
Tsjerk Wassenaar
 - [gmx-users] g_covar -ref
 
vijaya subramanian
 - [gmx-users] g_covar -ref
 
Tsjerk Wassenaar
 - [gmx-users] g_covar -ref
 
vijaya subramanian
 - [gmx-users] What is Dmax,	and are .tpr files transferrable between operating systems
 
Warren Gallin
 - [gmx-users] What is Dmax, and are .tpr files transferrable between	operating systems
 
Justin A. Lemkul
 - [gmx-users] g_covar -ref
 
Tsjerk Wassenaar
 - [gmx-users] g_covar -ref
 
vijaya subramanian
 - [gmx-users] g_covar -ref
 
Tsjerk Wassenaar
 - [gmx-users] T-coupling groups
 
Zuzana Benkova
 - [gmx-users] T-coupling groups
 
Justin A. Lemkul
 - [gmx-users] T-coupling groups
 
jampani srinivas
 - [gmx-users] g_bundle problem
 
Stefan Hoorman
 - [gmx-users] g_bundle problem
 
Justin A. Lemkul
 - [gmx-users] g_bundle problem
 
Justin A. Lemkul
 - [gmx-users] g_bundle problem
 
Milan Melichercik
 - [gmx-users] removal of center of mass motion needed for accelerated	water molecules?
 
Yang Wang
 - [gmx-users] compile problem on Centos X86_64 with gcc44 and fftw2
 
Wu Rongqin
 - [gmx-users] compile problem on Centos X86_64 with gcc44 and fftw2
 
Justin A. Lemkul
 - 答复: [gmx-users] compile problem on Centos X86_64 with gcc44 and fftw2
 
Wu Rongqin
 - Re: 答复: [gmx-users] compile problem on Centos X86_64 with gcc44 and fftw2
 
Mark Abraham
 - [gmx-users] Fwd: Deprotonated Cys
 
David van der Spoel
 - [gmx-users] T-coupling groups
 
Zuzana Benkova
 - [gmx-users] Free Energy Calculation
 
Anirban Ghosh
 - [gmx-users] Converting a solvent box file from Amber
 
Simone Cirri
 - [gmx-users] Converting a solvent box file from Amber
 
Justin A. Lemkul
 - [gmx-users] Converting a solvent box file from Amber
 
David van der Spoel
 - [gmx-users] Converting a solvent box file from Amber
 
Justin A. Lemkul
 - [gmx-users] Re: g_bundle problem
 
Stefan Hoorman
 - [gmx-users] Re: g_bundle problem
 
Justin A. Lemkul
 - [gmx-users] charge group assignment with AMBER parameters
 
Jacob Spooner
 - [gmx-users] charge group assignment with AMBER parameters
 
Justin A. Lemkul
 - [gmx-users] Re: Re: g_bundle problem
 
Stefan Hoorman
 - [gmx-users] Re: Re: g_bundle problem
 
Justin A. Lemkul
 - [gmx-users] modified VdW potential
 
Cristiano De Michele
 - [gmx-users] gromacs/mopac interface
 
Vitaly V. Chaban
 - [gmx-users] averaged pressure not consistent with set value
 
Wu Rongqin
 - [gmx-users] averaged pressure not consistent with set value
 
Justin A. Lemkul
 - [gmx-users] averaged pressure not consistent with set value
 
Sander Pronk
 - [gmx-users] Re: gmx-users Digest, Vol 71, Issue 102
 
Amil Anderson
 - [gmx-users] Dynamic cross correlation map
 
sukesh chandra gain
 - [gmx-users] Free Energy Calculation
 
Anirban Ghosh
 - [gmx-users] video: Introduction to molecular dynamics simulations
 
anna_gromacs at libero.it
 - [gmx-users] Free Energy Calculation
 
Sander Pronk
 - [gmx-users] [help]How to produce .top file from Material Studio
 
程迪
 - [gmx-users] g_wham error
 
Jochen Hub
 - [gmx-users] Re: g_desort
 
Chris Neale
 - [gmx-users] Facing difficulty to install gromacs -reg
 
ITHAYARAJA
 - [gmx-users] Facing difficulty to install gromacs -reg
 
Justin A. Lemkul
 - [gmx-users] Literature for DNA Binding Protein Simulations
 
Arden Perkins
 - [gmx-users] Literature for DNA Binding Protein Simulations
 
Justin A. Lemkul
 - [gmx-users] [help]How to produce .top file from Material Studio
 
Yang Ye
 - [gmx-users] [help]How to produce .top file from Material	Studio
 
szewczyk at ualberta.ca
 - [gmx-users] new/old gromacs-wiki
 
Christian Seifert
 - [gmx-users] Dynamics cross correlation map
 
sukesh chandra gain
 - [gmx-users] Dynamics cross correlation map
 
Tsjerk Wassenaar
 - [gmx-users] Re: gmx-users Digest, Vol 71, Issue 105
 
程迪
 - [gmx-users] Fw: query regarding pdb2gmx program for protein with	metal and a ligand
 
sonali dhindwal
 - [gmx-users] Re: gmx-users Digest, Vol 71, Issue 105
 
程迪
 - [gmx-users] Re: x2top
 
Vitaly V. Chaban
 - [gmx-users] new/old gromacs-wiki
 
Mark Abraham
 - [gmx-users] Re: x2top
 
Justin A. Lemkul
 - [gmx-users] Fw: query regarding pdb2gmx program for protein with	metal and a ligand
 
Mark Abraham
 - [gmx-users] Fw: query regarding pdb2gmx program for protein with	metal and a ligand
 
Justin A. Lemkul
 - [gmx-users] Re: x2top
 
程迪
 - [gmx-users] Where can I find the source code of x2top?
 
程迪
 - [gmx-users] Re: x2top
 
Justin A. Lemkul
 - [gmx-users] Where can I find the source code of x2top?
 
Justin A. Lemkul
 - [gmx-users] Re: x2top
 
Vitaly V. Chaban
 - [gmx-users] Literature for DNA Binding Protein Simulations
 
Arden Perkins
 - [gmx-users] Using lennard jones and buckingham terms simultaneously
 
Gareth Tribello
 - [gmx-users] Re: Using lennard jones and buckingham terms	simultaneously
 
Vitaly V. Chaban
 - [gmx-users] trn file
 
Maurício Menegatti Rigo
 - [gmx-users] trn file
 
Justin A. Lemkul
 - [gmx-users] Literature for DNA Binding Protein Simulations
 
Justin A. Lemkul
 - [gmx-users] Using lennard jones and buckingham terms	simultaneously
 
Matthew Watkins
 - [gmx-users] trn file
 
Maurício Menegatti Rigo
 - [gmx-users] trn file
 
Justin A. Lemkul
 - [gmx-users] Using lennard jones and buckingham	terms	simultaneously
 
Justin A. Lemkul
 - [gmx-users] how to combine 2 DPPC lipid bilayers
 
edmund lee
 - [gmx-users] how to combine 2 DPPC lipid bilayers
 
Justin A. Lemkul
 - [gmx-users] make ghost atom
 
Park, Jae Hyun nmn
 - [gmx-users] Using lennard jones and buckingham	terms	simultaneously
 
Mark Abraham
 - [gmx-users] Literature for DNA Binding Protein Simulations
 
Mark Abraham
 - [gmx-users] Re: x2top
 
程迪
 - [gmx-users] Dynamics cross correlation map
 
sukesh chandra gain
 - [gmx-users] Dynamics cross correlation map
 
Ran Friedman, Biochemisches Inst.
 - [gmx-users] Re:x2top
 
Vitaly V. Chaban
 - [gmx-users] extract subsystem energy: problem with mdrun -rerun and	LJ(SR)
 
Andrea Minoia
 - [gmx-users] extract subsystem energy: problem with mdrun -rerun	and	LJ(SR)
 
Mark Abraham
 - [gmx-users] make ghost atom
 
ilona.baldus at bioquant.uni-heidelberg.de
 - [gmx-users] extract subsystem energy: problem with mdrun -rerun 	and LJ(SR)
 
Andrea Minoia
 - [gmx-users] Dynamics cross correlation map
 
Tsjerk Wassenaar
 - [gmx-users] extract subsystem energy: problem with mdrun -rerun 	and LJ(SR)
 
Andrea Minoia
 - [gmx-users] Query regarding toplogy of Manganese ion in protein
 
sonali dhindwal
 - [gmx-users] Re: Query regarding toplogy of Manganese ion in protein
 
sonali dhindwal
 - [gmx-users] Query regarding toplogy of Manganese ion in protein
 
Justin A. Lemkul
 - [gmx-users] Query regarding toplogy of Manganese ion in protein
 
sonali dhindwal
 - [gmx-users] Query regarding toplogy of Manganese ion in protein
 
Mark Abraham
 - [gmx-users] how to reconstruct potentials of mean force through	time series analysis of SMD or pulling simulations
 
xi zhao
 - [gmx-users] how to reconstruct potentials of mean force through	time series analysis of SMD or pulling simulations
 
Justin A. Lemkul
 - [gmx-users] how to analye a single structure (NMR or X-ray) by PCA?
 
xi zhao
 - [gmx-users] how to analye a single structure (NMR or X-ray) by	PCA?
 
Justin A. Lemkul
 - [gmx-users] how to reconstruct potentials of mean force through	time series analysis of SMD or pulling simulations
 
xi zhao
 - [gmx-users] how to reconstruct potentials of mean force through	time series analysis of SMD or pulling simulations
 
Justin A. Lemkul
 - [gmx-users] how to analye a single structure (NMR or X-ray) by 	PCA?
 
Tsjerk Wassenaar
 - [gmx-users] how to reconstruct potentials of mean force through	time series analysis of SMD or pulling simulations
 
xi zhao
 - [gmx-users] how to reconstruct potentials of mean force through	time series analysis of SMD or pulling simulations
 
xi zhao
 - [gmx-users] how to reconstruct potentials of mean force through	time series analysis of SMD or pulling simulations
 
Justin A. Lemkul
 - [gmx-users] how to reconstruct potentials of mean force through	time series analysis of SMD or pulling simulations
 
Justin A. Lemkul
 - [gmx-users] how to reconstruct potentials of mean force through	time series analysis of SMD or pulling simulations
 
Berk Hess
 - [gmx-users] cutoff problem
 
Qian Wang
 - [gmx-users] cutoff problem
 
Justin A. Lemkul
 - [gmx-users] Re: Re: Re: g_bundle problem
 
Stefan Hoorman
 - [gmx-users] Re: Re: Re: g_bundle problem
 
Justin A. Lemkul
 - [gmx-users] Semi-isotropic pressure coupling.
 
sapna sarupria
 - [gmx-users] Re: cutoff problem
 
Vitaly V. Chaban
 - [gmx-users] Re: Re: Re: Re: g_bundle problem
 
Stefan Hoorman
 - [gmx-users] Re: Re: Re: Re: g_bundle problem
 
Justin A. Lemkul
 - [gmx-users] Re: cutoff problem
 
XAvier Periole
 - [gmx-users] CG Force and Potential through do_force()
 
Sikandar Mashayak
 - [gmx-users] CG Force and Potential through do_force()
 
Mark Abraham
 - [gmx-users] Hydrogen Bond Acceptor-Donor List
 
Anirban Ghosh
 - [gmx-users] CG Force and Potential through do_force()
 
Sikandar Mashayak
 - [gmx-users] CG Force and Potential through do_force()
 
Mark Abraham
 - [gmx-users] Hydrogen Bond Acceptor-Donor List
 
Mark Abraham
 - [gmx-users] Re: cutoff problem
 
Vitaly V. Chaban
 - [gmx-users] g_covar & g_anaeig problems
 
Arne.Wagner at student.uib.no
 - [gmx-users] make ghost atom
 
Jochen Hub
 - [gmx-users] CG Force and Potential through do_force()
 
XAvier Periole
 - [gmx-users] checkpointing in 4.0.7
 
Dr. Leonid Yelash
 - [gmx-users] Re: cutoff problem
 
Justin A. Lemkul
 - [gmx-users] query regarding neutralisation of charge on protein
 
sonali dhindwal
 - [gmx-users] Re: cutoff problem
 
XAvier Periole
 - [gmx-users] query regarding neutralisation of charge on protein
 
Justin A. Lemkul
 - [gmx-users] Please help to change the force field
 
Alexandr Sorochan
 - [gmx-users] omit solvent's coordinates in output file
 
vedat durmaz
 - [gmx-users] omit solvent's coordinates in output file
 
Justin A. Lemkul
 - [gmx-users] CG Force and Potential through do_force()
 
Sikandar Mashayak
 - [gmx-users] Re: Problem with GROMACS, please guide me
 
XAvier Periole
 - [gmx-users] simulation with CsCl
 
Cecilia Fernándz Gauna
 - [gmx-users] simulation with CsCl
 
Justin A. Lemkul
 - [gmx-users] trjconv and ions
 
Joe Joe
 - [gmx-users] Re: Problem with GROMACS, please guide me
 
Vitaly V. Chaban
 - [gmx-users] trjconv and ions
 
Tsjerk Wassenaar
 - [gmx-users] Using lennard jones and buckingham terms 	simultaneously
 
Gareth Tribello
 - [gmx-users] CG Force and Potential through do_force()
 
Sikandar Mashayak
 - [gmx-users] omit solvent's coordinates in output file
 
Mark Abraham
 - [gmx-users] CG Force and Potential through do_force()
 
Mark Abraham
 - [gmx-users] CG Force and Potential through do_force()
 
Mark Abraham
 - [gmx-users] CG Force and Potential through do_force()
 
Sikandar Mashayak
 - [gmx-users] Using lennard jones and buckingham	terms	simultaneously
 
Mark Abraham
 - [gmx-users] CG Force and Potential through do_force()
 
Mark Abraham
 - [gmx-users] Please help to change the force field
 
Mark Abraham
 - [gmx-users] checkpointing in 4.0.7
 
Mark Abraham
 - [gmx-users] g_covar & g_anaeig problems
 
Jared James Thompson
 - [gmx-users] genion: can you place the ions at one location in the	box?
 
Smiruthi Ramasubramanian
 - [gmx-users] genion: can you place the ions at one location in	the	box?
 
Justin A. Lemkul
 - [gmx-users] How to include sodium ion
 
Lum Nforbi
 - [gmx-users] How to include sodium ion
 
Justin A. Lemkul
 - [gmx-users] trjconv and ions
 
Joe Joe
 - [gmx-users] Fatal error: Atomtype Qd not found
 
rainy908 at yahoo.com
 - [gmx-users] Fatal error: Atomtype Qd not found
 
Justin A. Lemkul
 - [gmx-users] how to set pull_rate
 
Qian Wang
 - [gmx-users] how to set pull_rate
 
Justin A. Lemkul
 - [gmx-users] Fatal error: Atomtype Qd not found
 
rainy908 at yahoo.com
 - [gmx-users] Fatal error: Atomtype Qd not found
 
Justin A. Lemkul
 - [gmx-users] what's the differences between double precise version	and single precise?
 
DreamCatcher
 - [gmx-users] Fatal error: Atomtype Qd not found
 
rainy908 at yahoo.com
 - [gmx-users] How to merge 2 simulation boxes?
 
程迪
 - [gmx-users] How to merge 2 simulation boxes?
 
Amit Choubey
 - [gmx-users] How to merge 2 simulation boxes?
 
Mark Abraham
 - [gmx-users] Re: How to merge 2 simulation boxes?
 
Vitaly V. Chaban
 - [gmx-users] g_covar & g_anaeig problems
 
Tsjerk Wassenaar
 - [gmx-users] what's the differences between double precise version	and single precise?
 
Justin A. Lemkul
 - [gmx-users] energy minimization of a box containing two Na+ ions	and water does not converge
 
Ozge Engin
 - [gmx-users] energy minimization of a box containing two Na+ ions	and water does not converge
 
Justin A. Lemkul
 - [gmx-users] energy minimization of a box containing two Na+ ions	and water does not converge
 
Ozge Engin
 - [gmx-users] g_helix
 
Carla Jamous
 - [gmx-users] water box with prescribed volume and density
 
grivet
 - [gmx-users] g_helix
 
Justin A. Lemkul
 - [gmx-users] water box with prescribed volume and density
 
Justin A. Lemkul
 - [gmx-users] Urey Bradley Parameters in GROMACS
 
PRADEEP VENKATARAMAN
 - [gmx-users] Urey Bradley Parameters in GROMACS
 
Justin A. Lemkul
 - [gmx-users] Converting SDF to Mol2 Format
 
Nancy
 - [gmx-users] POPC Membrane + protein dynamics
 
padhu at ncbs.res.in
 - [gmx-users] POPC Membrane + protein dynamics
 
Justin A. Lemkul
 - [gmx-users] output forces between group of atoms
 
BIN ZHANG
 - [gmx-users] Negative number of RMSD calculations left in g_cluster
 
Bob Johnson
 - [gmx-users] output forces between group of atoms
 
Mark Abraham
 - [gmx-users] Difference between kinetic energy from .xvg file and	calculated kinetic energy from velocities
 
Samantha Sanders
 - [gmx-users] Difference between kinetic energy from .xvg file	and	calculated kinetic energy from velocities
 
Mark Abraham
 - [gmx-users] Regarding increasing the time period of previous	simulation
 
sonali dhindwal
 - [gmx-users] Parallel vs Serial Gromacs Run Results
 
Sikandar Mashayak
 - [gmx-users] Regarding increasing the time period of previous	simulation
 
Mark Abraham
 - [gmx-users] Parallel vs Serial Gromacs Run Results
 
Mark Abraham
 - [gmx-users] mean force.
 
lammps lammps
 - [gmx-users] POPC Membrane + protein dynamics
 
ravi sharma
 - [gmx-users] Negative number of RMSD calculations left in g_cluster
 
David van der Spoel
 - [gmx-users] POPC Membrane + protein dynamics
 
Justin A. Lemkul
 - [gmx-users] RE: Difference between kinetic energy from .xvg file	and calculated kinetic energy from velocities
 
Samantha Sanders
 - [gmx-users] query regarding atom type
 
sonali dhindwal
 - [gmx-users] query regarding atom type
 
Justin A. Lemkul
 - [gmx-users] query regarding atom type
 
sonali dhindwal
 - [gmx-users] query regarding atom type
 
Justin A. Lemkul
 - [gmx-users] query regarding atom type
 
durmaz at zib.de
 - [gmx-users] RE: Difference between kinetic energy from .xvg file	and calculated kinetic energy from velocities
 
Mark Abraham
 - [gmx-users] vapor phase pmf correction
 
Robin C. Underwood
 - [gmx-users] query regarding atom type
 
sonali dhindwal
 - [gmx-users] vapor phase pmf correction
 
David van der Spoel
 - [gmx-users] Inner product between old and new vector <= 0.0!
 
程迪
 - [gmx-users] configure error
 
lina
 - [gmx-users] Inner product between old and new vector <= 0.0!
 
Justin A. Lemkul
 - [gmx-users] output forces between group of atoms
 
BIN ZHANG
 - [gmx-users] configure error
 
Mark Abraham
 - [gmx-users] cvs version
 
Mu Yuguang (Dr)
 - [gmx-users] cvs version
 
Yang Ye
 - [gmx-users] Re: configure error
 
lina
 - [gmx-users] About Git version of Gromacs
 
babu gokul
 - [gmx-users] About Git version of Gromacs
 
Mark Abraham
 - [gmx-users] Cannot allocate memory
 
lina
 - [gmx-users] Cannot allocate memory
 
Mark Abraham
 - [gmx-users] POPC Membrane + protein dynamics
 
ravi sharma
 - [gmx-users] checkpointing in 4.0.7
 
Dr. Leonid Yelash
 - [gmx-users] MPI problem——Cannot compile and link MPI code with cc
 
DreamCatcher
 - [gmx-users] MPI problem——Cannot compile and link MPI code with cc
 
Mark Abraham
 - [gmx-users] Re: MPI problem——Cannot compile and link MPI code with cc
 
DreamCatcher
 - [gmx-users] Re: MPI problem——Cannot compile and link MPI code with cc
 
Justin A. Lemkul
 - [gmx-users] RE:directed trajectories
 
lloyd riggs
 - [gmx-users] RE:directed trajectories
 
Tsjerk Wassenaar
 - [gmx-users] MPI problem------Cannot compile and link MPI code with cc
 
Gavin Melaugh
 - [gmx-users] regarding gen-pairs
 
Gavin Melaugh
 - [gmx-users] RE:directed trajectories
 
Mark Abraham
 - [gmx-users] how to get angle-time data?
 
Wu Rongqin
 - [gmx-users] regarding gen-pairs
 
XAvier Periole
 - [gmx-users] regarding gen-pairs
 
Mark Abraham
 - [gmx-users] how to get angle-time data?
 
XAvier Periole
 - [gmx-users] how to get angle-time data?
 
Mark Abraham
 - [gmx-users] Re: How to include sodium ion (Reply to Justin's mail)
 
Lum Nforbi
 - [gmx-users] Re: How to include sodium ion (Reply to Justin's mail)
 
Justin A. Lemkul
 - [gmx-users] genion: can you place the ions at one location in the	box?
 
Smiruthi Ramasubramanian
 - [gmx-users] genion: can you place the ions at one location in	the	box?
 
Justin A. Lemkul
 - [gmx-users] genion: can you place the ions at one location in	the	box?
 
Justin A. Lemkul
 - [gmx-users] Re: How to include sodium ion (Reply to Justin's 	mail)
 
Oliver Stueker
 - [gmx-users] about Git in Gromacs
 
babu gokul
 - [gmx-users] about Git in Gromacs
 
Mark Abraham
 - [gmx-users] Signal 11 crash
 
程迪
 - [gmx-users] Parallel pulling with Gromacs 4.0.7: COMM mode problem
 
Aykut Erbas
 - [gmx-users] Signal 11 crash
 
Sander Pronk
 - [gmx-users] git installation error
 
babu gokul
 - [gmx-users] git installation error
 
Sander Pronk
 - [gmx-users] problem with the energy minimization of a system	composed of two NA+ ions and explicit water
 
Ozge Engin
 - [gmx-users] Parallel pulling with Gromacs 4.0.7: COMM mode problem
 
chris.neale at utoronto.ca
 - [gmx-users] problem with the energy minimization of a system	composed of two NA+ ions and explicit water
 
Justin A. Lemkul
 - [gmx-users] Parallel pulling with Gromacs 4.0.7: COMM mode problem
 
chris.neale at utoronto.ca
 - [gmx-users] Parallel pulling with Gromacs 4.0.7: COMM mode problem
 
Aykut Erbas
 - [gmx-users] Parallel pulling with Gromacs 4.0.7: COMM mode problem
 
chris.neale at utoronto.ca
 - [gmx-users] Signal 11 crash
 
程迪
 - [gmx-users] Parallel pulling with Gromacs 4.0.7: COMM mode problem
 
Aykut Erbas
 - [gmx-users] Signal 11 crash
 
Justin A. Lemkul
 - [gmx-users] problem with the energy minimization of a system	composed of two NA+ ions and explicit water
 
Berk Hess
 - [gmx-users] gmx_fatal.c, line: 481
 
carolsilva1 at cantv.net
 - [gmx-users] Using lennard jones and buckingham terms 	simultaneously
 
Gareth Tribello
 - [gmx-users] water box with prescribed volume and density
 
grivet
 - [gmx-users] mean force.
 
Jochen Hub
 - [gmx-users] Using lennard jones and buckingham terms	simultaneously
 
Matthew Watkins
 - [gmx-users] gmx_fatal.c, line: 481
 
Sander Pronk
 - [gmx-users] Exploding box (in one dimension) Semi-isotropic	pressure coupling?
 
sapna sarupria
 - [gmx-users] Exploding box (in one dimension) Semi-isotropic	pressure coupling?
 
Sander Pronk
 - [gmx-users] Exploding box (in one dimension) Semi-isotropic 	pressure coupling?
 
sapna sarupria
 - [gmx-users] water box with prescribed volume and density
 
Justin A. Lemkul
 - [gmx-users] Exploding box (in one dimension) Semi-isotropic	pressure coupling?
 
Sander Pronk
 - [gmx-users] Parallel pulling with Gromacs 4.0.7: COMM mode problem
 
Chris Neale
 - [gmx-users] Exploding box (in one dimension) Semi-isotropic 	pressure coupling?
 
sapna sarupria
 - [gmx-users] Pressure average problem
 
nishap.patel at utoronto.ca
 - [gmx-users] Pressure average problem
 
Mark Abraham
 - [gmx-users] Using lennard jones and buckingham	terms	simultaneously
 
Mark Abraham
 - [gmx-users] Pressure average problem
 
nishap.patel at utoronto.ca
 - [gmx-users] density tip3p
 
nishap.patel at utoronto.ca
 - [gmx-users] density tip3p
 
Sander Pronk
 - [gmx-users] density tip3p
 
nishap.patel at utoronto.ca
 - [gmx-users] NVE mdp
 
Ramachandran G
 - [gmx-users] NVE mdp
 
Mark Abraham
 - [gmx-users] Distorted protein structure after MD simulation
 
sonali dhindwal
 - [gmx-users] Distorted protein structure after MD simulation
 
Mark Abraham
 - [gmx-users] Distorted protein structure after MD simulation
 
prajwal nandekar
 - [gmx-users] suitable parameter settings for intermolecular	non-bonded interaction
 
vedat durmaz
 - [gmx-users] Parallel pulling with Gromacs 4.0.7: COMM mode problem
 
Aykut Erbas
 - [gmx-users] Parallel pulling with Gromacs 4.0.7: COMM mode problem
 
Berk Hess
 - [gmx-users] Parallel pulling with Gromacs 4.0.7: COMM mode problem
 
Aykut Erbas
 - [gmx-users] suitable parameter settings for intermolecular	non-bonded interaction
 
Sander Pronk
 - [gmx-users] Parallel pulling with Gromacs 4.0.7: COMM mode problem
 
Berk Hess
 - [gmx-users] suitable parameter settings for	intermolecular	non-bonded interaction
 
Mark Abraham
 - [gmx-users] about water models
 
Alan
 - [gmx-users] about water models
 
Berk Hess
 - [gmx-users] Parallel pulling with Gromacs 4.0.7: COMM mode problem
 
Aykut Erbas
 - [gmx-users] suitable parameter settings	for	intermolecular	non-bonded interaction
 
vedat durmaz
 - [gmx-users] Re: about water models
 
Alan
 - [gmx-users] suitable parameter	settings	for	intermolecular	non-bonded interaction
 
Mark Abraham
 - [gmx-users] suitable	parameter	settings	for	intermolecular	non-bonded interaction
 
vedat durmaz
 - [gmx-users] density tip3p
 
nishap.patel at utoronto.ca
 - [gmx-users] density tip3p
 
Mark Abraham
 - [gmx-users] Can GROMACs use multiple van der Waals potentials and	multiple van der Waals potential cutoffs?
 
hong bingbing
 - [gmx-users] Can GROMACs use multiple van der Waals potentials	and	multiple van der Waals potential cutoffs?
 
David van der Spoel
 - [gmx-users] Re Can GROMACs use multiple van der Waals potentials	and multiple van der Waals potential cutoffs?
 
hong bingbing
 - [gmx-users] Re Can GROMACs use multiple van der Waals potentials	and multiple van der Waals potential cutoffs?
 
David van der Spoel
 - [gmx-users] about water models
 
Dallas B. Warren
 - 回复: [gmx-users] Re Can GROMACs use multiple van der Waals potentials and multiple van der Waals potential cutoffs?
 
hong bingbing
 - [gmx-users] Chloroform as Solvent
 
Esteban Gabriel Vega Hissi
 - [gmx-users] Chloroform as Solvent
 
Justin A. Lemkul
    
 
    
      Last message date: 
       Wed Mar 31 23:50:12 CEST 2010
    Archived on: Thu Nov 14 12:08:24 CET 2013
    
   
     
     
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