[gmx-users] harmonic restraints

Ajeeta kaushiki ajeetakaushiki at gmail.com
Thu Mar 4 12:15:14 CET 2010

Dear Sir

I am doing a coarse grain MD of a membrane protein using Martini force field
and parameters  . In course I am facing problem in understanding " how the
harmonic restraints will be applied to mimic secondary structure H- Bonds of
the atomic structure to the coarse grain model to maintain secondary
structure element " . Is this will be specified in the 'mdp' file .

Thanks & Regards
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