[gmx-users] harmonic restraints

[Ajeeta kaushiki]

Dear Sir

I am doing a coarse grain MD of a membrane protein using Martini force field
and parameters  . In course I am facing problem in understanding " how the
harmonic restraints will be applied to mimic secondary structure H- Bonds of
the atomic structure to the coarse grain model to maintain secondary
structure element " . Is this will be specified in the 'mdp' file .


Thanks & Regards
Ajeeta
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