[gmx-users] g_rms warning

[Carla Jamous]

Hi everyone, please I just need a precision:

I need to calculate the RMSD of a trajectory by comparing it to a reference
structure that doesn't have the same number of atoms.
Gromacs is calculating the RMSD, but meanwhile it generates this
warning:"topology has 4839 atoms, whereas trajectory has 4834"

Does it really affect the result of my RMSD or can I ignore it?

Thanks
Carla
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