[gmx-users] local destabilization of bilayer

[afsaneh maleki]

Hi,

How do i calculate local destabilization of bilayer?
 I can calculate the thickness of the bilayer in the membrane protein with
GridMAT-MD but i can't compare it with thickness of pure bilayer. Would you
please elaborate it clearly?

when i calculated thickness of bilayer in membrane protein with GridMAT-MD i
do following as:

./GridMAT-MD.pl param_example
perl convert_to_gnuplot.pl  20*20_average.dat 20 20
gnuplot
splot ' 20*20_average.dat' matrix using(1+$1):(1+$2):3
set pm3d map
replot


but  "20x20_average_pbc.dat" contains a single column of numbers and 400 raw
line. is it correct?

Thanks very much in advance,
Afsaneh Maleki
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20100309/6ede88c3/attachment.html>