[gmx-users] local destabilization of bilayer
maleki.afsaneh at gmail.com
Tue Mar 9 15:18:31 CET 2010
How do i calculate local destabilization of bilayer?
I can calculate the thickness of the bilayer in the membrane protein with
GridMAT-MD but i can't compare it with thickness of pure bilayer. Would you
please elaborate it clearly?
when i calculated thickness of bilayer in membrane protein with GridMAT-MD i
do following as:
perl convert_to_gnuplot.pl 20*20_average.dat 20 20
splot ' 20*20_average.dat' matrix using(1+$1):(1+$2):3
set pm3d map
but "20x20_average_pbc.dat" contains a single column of numbers and 400 raw
line. is it correct?
Thanks very much in advance,
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