[gmx-users] Thickness

[afsaneh maleki]

Hi,

I used bilayer that consisted of 128 DOPC lipids as DOPC128.pdb as the
primary bilayer and insert protein in bilayer  with Inflategro program. when
i expanded  the bilayer, two DOPC molecules  exited from box. i simulated
this system and obtained the thickness of bilayer with GrigMAT_MD. i want to
subtract the thickness of pure bilayer from the bilayer that contain the
protein.

would one please elaborate step by step how to subtract the thickness of the
pure bilayer( 128 DOPC) from the bilayer (126 DOPC) that contains the
protein to get two-dimensional maps of ∆Z that indicate deviation from the
thickness of pure bilayer ?

Thanks in advance,
Afsaneh
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20100316/0e655946/attachment.html>