[gmx-users] Help for running gromacs

priyanka panwar priyankapanwar20 at gmail.com
Mon May 3 08:12:10 CEST 2010


I am  using Gromacs for Simulation of Insulin.I have generated most of the
files but unable to generate the ions.pdb file.The system is becoming idle
after the Selection command. A line on the command prompt appears as
"replacing solvent molecule with Na" and remains as such for many hours. Is
this step really takes too much time or I am doing something wrong.
Thanks
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