[gmx-users] Help for running gromacs

Krzysztof Mlynarczyk mitomaster at gmail.com
Mon May 3 13:01:12 CEST 2010

Please post more details including the following:

   - What is the exact command line?
   - What group do you select as a "continuous solvent"? I know it might
   sound weird to ask this but what I learned while teaching students is that
   these questions really should be asked when there are problems.
   - Which version of Gromacs are you using?

2010/5/3 priyanka panwar <priyankapanwar20 at gmail.com>

> I am  using Gromacs for Simulation of Insulin.I have generated most of the
> files but unable to generate the ions.pdb file.The system is becoming idle
> after the Selection command. A line on the command prompt appears as
> "replacing solvent molecule with Na" and remains as such for many hours. Is
> this step really takes too much time or I am doing something wrong.
> Thanks
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