[gmx-users] rmsd between different monomers

[Anupam Nath Jha]

Dear all

How can we calculate the rmsd between different monomers from of a protein. for
example I have a tetramer and I have to calculate the rmsd between chain A to B,
A to C and A to D with time.

I was trying using g_rms but couldn't do that.

thanks with regards
anupam



--
Science is facts; just as houses are made of stone, so is science is made of
facts; but a pile of stones is not a house, and  a collection of facts is not
necessarily science.

Anupam Nath Jha
Ph. D. Student
Saraswathi Vishveshwara Lab
Molecular Biophysics Unit
IISc,Bangalore-560012
Karnataka
Ph. no.-22932611



-- 
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.