[gmx-users] rmsd between different monomers

Anupam Nath Jha anupam at mbu.iisc.ernet.in
Fri May 7 11:11:48 CEST 2010

Dear all

How can we calculate the rmsd between different monomers from of a protein. for
example I have a tetramer and I have to calculate the rmsd between chain A to B,
A to C and A to D with time.

I was trying using g_rms but couldn't do that.

thanks with regards

Science is facts; just as houses are made of stone, so is science is made of
facts; but a pile of stones is not a house, and  a collection of facts is not
necessarily science.

Anupam Nath Jha
Ph. D. Student
Saraswathi Vishveshwara Lab
Molecular Biophysics Unit
Ph. no.-22932611

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