[gmx-users] rmsd between different monomers

[Shankar Prasad Kanaujia]

There is one web-server in our lab.
http://10.188.1.15/3dss/
Use third option.

On Fri, May 7, 2010 at 2:41 PM, Anupam Nath Jha <anupam at mbu.iisc.ernet.in>wrote:

>
> Dear all
>
> How can we calculate the rmsd between different monomers from of a protein.
> for
> example I have a tetramer and I have to calculate the rmsd between chain A
> to B,
> A to C and A to D with time.
>
> I was trying using g_rms but couldn't do that.
>
> thanks with regards
> anupam
>
>
>
> --
> Science is facts; just as houses are made of stone, so is science is made
> of
> facts; but a pile of stones is not a house, and  a collection of facts is
> not
> necessarily science.
>
> Anupam Nath Jha
> Ph. D. Student
> Saraswathi Vishveshwara Lab
> Molecular Biophysics Unit
> IISc,Bangalore-560012
> Karnataka
> Ph. no.-22932611
>
>
>
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-- 
Yours Sincerely,
Shankar Prasad Kanaujia
Research Student
C/O - Dr. K. Sekar
Bioinformatics Centre, SERC
Indian Institute of Science, Bangalore-12
Phone - 9480258032
Office - 080-2293-3059
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