[gmx-users] how to show structure results in Martini coarse-grained simulation?

[Justin A. Lemkul]

xi zhao wrote:
> 
> Yes， I load my coarse-grained PDB ,then load ps as data, but the 
> stucture still was full of points .
> 

Is a proper "!NBOND" section generated in your .psf file?  If the script 
finishes without any errors, the output should be viable.

-Justin

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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