[gmx-users] how to show structure results in Martini coarse-grained simulation?

Justin A. Lemkul jalemkul at vt.edu
Fri May 7 13:10:45 CEST 2010

xi zhao wrote:
> Yes, I load my coarse-grained PDB ,then load ps as data, but the 
> stucture still was full of points .

Is a proper "!NBOND" section generated in your .psf file?  If the script 
finishes without any errors, the output should be viable.



Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


More information about the gromacs.org_gmx-users mailing list