[gmx-users] rmsd between different monomers

[Mark Abraham]

On 7/05/2010 7:11 PM, Anupam Nath Jha wrote:
>
> Dear all
>
> How can we calculate the rmsd between different monomers from of a protein. for
> example I have a tetramer and I have to calculate the rmsd between chain A to B,
> A to C and A to D with time.
>
> I was trying using g_rms but couldn't do that.

g_rms does that, but we're not going to guess what you were doing wrong. 
Tell us what you did and why it didn't work like you expected it to :-)

Mark