[gmx-users] g_sdf

[Nilesh Dhumal]

Hello Justin,
I am doing solvation of glucose in ionic liquids. I want to show that
glucose in surrounded by cation by ploting the iso-surface.
Becuase of this I am using g_sdf. THe out put file is in .plt file. Can I
get use gassview to plot the iso-surface.
Do you think still I can use g_spatial to get the *.cub file.

Nilesh

On Tue, May 11, 2010 1:42 pm, Justin A. Lemkul wrote:
>

>
> Nilesh Dhumal wrote:
>
>> Hello,
>> I am trying to calculate spatial distribution function (SDF) for my
>> system. Can I genrate the *.cube file or gaussian format file using sdf?
>>  I want to use gassview or molden software to plot.
>>
>>
>
> Have you tried g_spatial -h?  I think you will find what you're looking
> for.
>
> -Justin
>
>
>>
>>
>> Thanks
>>
>>
>> Nilesh
>>
>>
>>
>>
>>
>>
>>
>
> --
> ========================================
>
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
>
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