[gmx-users] DSSP

shahid nayeem msnayeem at gmail.com
Tue May 18 09:42:34 CEST 2010

Dear All
I downloaded dsspcmbi.tar.gz, and compiled  using command
./DsspCompileGCC as given in Readme.txt file. when I try to run
do_dssp command in gromacs I get error

Fatal error:
DSSP executable (/usr/local/bin/dssp) does not exist (use setenv DSSP)

I checked for DSSP executible in /usr/local/bin/ and I couldnt find. I
even tried dsspcmbi.zip file but again I got the same error. I
compiled dssp as root. Now what shoul I do in order to run do_dssp
comand of gromacs.
Shahid nayeem

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