[gmx-users] g_clustsize output

David van der Spoel spoel at xray.bmc.uu.se
Thu May 20 07:32:06 CEST 2010

On 2010-05-20 04.55, toma0052 at umn.edu wrote:
> Hello,
> I have a system of dimers which spontaneously assemble into clusters. I
> would like to get a plot of the number of clusters of size s vs s. In
> looking at g_clustsize I am able to obtain the average number of
> clusters vs time, the average cluster size vs time and a histogram of
> the average number of molecules in a cluster of size s. Am I missing
> something? Is there a way for me to get the number of clusters of a
> particular size vs cluster size?
> Thanks,
> Mike Tomasini
g_clustsize will make an xpm plot for this as well, IIRC it is called 
csize.xpm. You can turn it into eps using xpm2ps.

David van der Spoel, Ph.D., Professor of Biology
Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205.
spoel at xray.bmc.uu.se    http://folding.bmc.uu.se

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