[gmx-users] g_clustsize output

toma0052 at umn.edu toma0052 at umn.edu
Sat May 22 00:28:09 CEST 2010

     Thanks for the response. g_clustsize outputs two xpm files of the 
weighted and non-weighted cluster size vs time. Is there another way for me 
to get number of clusters vs cluster size?


On May 20 2010, David van der Spoel wrote:

>On 2010-05-20 04.55, toma0052 at umn.edu wrote:
>> Hello,
>> I have a system of dimers which spontaneously assemble into clusters. I
>> would like to get a plot of the number of clusters of size s vs s. In
>> looking at g_clustsize I am able to obtain the average number of
>> clusters vs time, the average cluster size vs time and a histogram of
>> the average number of molecules in a cluster of size s. Am I missing
>> something? Is there a way for me to get the number of clusters of a
>> particular size vs cluster size?
>> Thanks,
>> Mike Tomasini
>g_clustsize will make an xpm plot for this as well, IIRC it is called 
>csize.xpm. You can turn it into eps using xpm2ps.

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