[gmx-users] coarse grain dynamics

ram bio rmbio861 at gmail.com
Tue May 25 16:03:29 CEST 2010

Dear Gromacs Users,

I have done coarse grain simulation for 2 peptides in bilayer for
1000ns, and now i would like to know the hydrogen bond interactions
between these two peptides. Please let me know how to do this, i can
visualize the trajectory in VMD, but unable to calculate the hydrogen
bonding distance and the hydrogen bonds existing..



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