[gmx-users] Need help!!!

praba vathy sumipraba2003 at gmail.com
Thu Sep 2 15:06:21 CEST 2010


Hi,

I am using simulation for a membrane protein.
So i have downloaded the dppc.pdb along with it's topology files.
I have used the following steps for the simulation (Based on the link:
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/01_pdb2gmx.html
).

We have used the commands and steps as described in the above link.
But we have got a fatal error (Atom type C not found) while running this
command,

grompp -f mini.mdp -c dppc128.gro -p topol_dppc.top -o em.tp

I cant sort out this problem.
Please anybody help me to sort out this problem.
Awaiting for your valuable replies.

Praba
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