[gmx-users] Re: VMD_PLUGIN_PATH

[PAUL NEWMAN]

Dear Mark,

Thanks for replying. Yes I am using bash. Yes the bash recognize the set
path. When I do echo, I got the follwoing

echo $VMD_PLUGIN_PATH

/home/pet/vmd/1.9/plugins/molfile

What can be wrong? Maybe the program is not in this folder? Which program is
searching for this pluging

Thanks for your help.


---------- Forwarded message ----------
From: Mark Abraham <Mark.Abraham at anu.edu.au>
To: Discussion list for GROMACS users <gmx-users at gromacs.org>
Date: Thu, 11 Aug 2011 19:51:04 +1000
Subject: Re: [gmx-users] VMD_PLUGIN_PATH
On 10/08/2011 1:21 PM, PAUL NEWMAN wrote:

Hi Gromacs Users,

I am using the gromacs analysing tools to analyze my DCD file produced by
NAMD. I set up the VMD_PLUGIN_PATH before running however I got the error
that the VMD_PLUGIN_PATH was not set up. Can anyone give me a hand? Please
see below the details. Thanks for the help

export VMD_PLUGIN_PATH=/home/pet/vmd/1.9/plugins/molfile


Are you using a shell where this works? What does "echo $VMD_PLUGIN_PATH"
say afterwards?

Mark


g_gyrate_d -f protein.dcd -s ../IN/protein.pdb

##############################

##############

The file format of protein.dcd is not a known trajectory format to GROMACS.
Please make sure that the file is a trajectory!
GROMACS will now assume it to be a trajectory and will try to open it using
the VMD plug-ins.
This will only work in case the VMD plugins are found and it is a trajectory
format supported by VMD.

No VMD Plugins found
Set the environment variable VMD_PLUGIN_PATH to the molfile folder within
the
VMD installation.
The architecture (e.g. 32bit versus 64bit) of Gromacs and VMD has to match.

-------------------------------------------------------
Program g_gyrate_d, VERSION 4.5.3
Source code file: trxio.c, line: 867

Fatal error:
Not supported in read_first_frame: protein.dcd
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
-------------------------------------------------------

"Lets Kill the Fucking Band"  (Tom Savini - From Dusk til Dawn)

############################################

-- 
Cheers,

Paul



-- 
Cheers,

Paul
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