[gmx-users] negative dihedral cp (during cgenff conversion)
Peter C. Lai
pcl at uab.edu
Mon Aug 15 02:50:35 CEST 2011
Random noob question:
Should the cp field (field 7) in [ dihedraltypes ] always be positive or can
it be negative?
In the CGenFF conversion, the CHARMM dihedral has:
OG302 CG2O2 CG321 CG331 -0.1500 1 180.00 ! LIPID methyl proprionate
when I convert to gromacs:
[ dihedraltypes ]
; i j k l func phi0 cp mult
OG302 CG2O2 CG321 CG331 9 180.0 -0.62760 1 ;LIPID methyl prop
This is the only instance I have seen of a negative number for the dihedral
term, so I wonder what the right way to handle it is...
(I suppose I could just run it and see...)
--
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Peter C. Lai | University of Alabama-Birmingham
Programmer/Analyst | BEC 257
Genetics, Div. of Research | 1150 10th Avenue South
pcl at uab.edu | Birmingham AL 35294-4461
(205) 690-0808 |
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