[gmx-users] Re: Looking for potential phosphate binding sites

[bharat gupta]

Yes, the phosphate ion moves around the protein but I am not able to find
out how many of them bind to my protein. How can that be done ??

On Thu, Dec 1, 2011 at 8:39 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:

>
>
> bharat gupta wrote:
>
>> Hi,
>>
>> Hi,
>>
>> I have done a simulation of 10ns with my proteins and 0.5 M phosphate
>> ion. Now I want to know where does the phosphate ion bind on the protein
>> surface or distribution of phosphate ions on protein surface ?? .. can help
>> me finding out this ....
>>
>>
> Have you watched the trajectory to see what happens?
>
> -Justin
>
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-- 
Bharat
Ph.D. Candidate
Room No. : 7202A, 2nd Floor
Biomolecular Engineering Laboratory
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