[gmx-users] Add bridging residue

Edvin Erdtman Edvin.Erdtman at hb.se
Wed Jan 12 15:54:45 CET 2011


To the Amber force field I want to add a new residue, which is connected covalently to another residue in a protein (similar to a CYS-CYS bridge). Can I define this bond somewhere in the force field files (rtp, atp...) so that the inter-residue bond can be generated by pdb2gmx? Or do I have to do it manually in the top-file?


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