[gmx-users] Add bridging residue

[Justin A. Lemkul]

Edvin Erdtman wrote:
> Hi
> 
> To the Amber force field I want to add a new residue, which is connected
> covalently to another residue in a protein (similar to a CYS-CYS bridge). Can
> I define this bond somewhere in the force field files (rtp, atp...) so that
> the inter-residue bond can be generated by pdb2gmx? Or do I have to do it
> manually in the top-file?
> 

Please see the following:

http://www.gromacs.org/Documentation/How-tos/Adding_a_Residue_to_a_Force_Field

-Justin

> /Edvin
> 

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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