[gmx-users] Add bridging residue

Justin A. Lemkul jalemkul at vt.edu
Wed Jan 12 16:27:39 CET 2011

Edvin Erdtman wrote:
> Hi
> To the Amber force field I want to add a new residue, which is connected
> covalently to another residue in a protein (similar to a CYS-CYS bridge). Can
> I define this bond somewhere in the force field files (rtp, atp...) so that
> the inter-residue bond can be generated by pdb2gmx? Or do I have to do it
> manually in the top-file?

Please see the following:



> /Edvin


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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