[gmx-users] Problem with using topolbuild1_3.tgz

Sweta Iyer iyer at wehi.EDU.AU
Fri Jan 21 00:41:29 CET 2011

Hi, I am trying to generate topology files for a set of lipids with the
help of topolbuild1_3.tgz package found at the other software page of
GROMACS website.

I downloaded and installed all files and tried running the program with a
MOL2 file with charges in it. However, it shows an error message as

Fatal error.
Source code file: readmol2.c, line: 758
Atom 1 (C) has 3 connections when allowed 0

 I am not sure how to get over this problem! Wonder what will fix this
error and get the program running!


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