[gmx-users] transmembrane protein simulation

Mohana lakshmi mohanaa.bioinfo at gmail.com
Mon Jan 24 05:39:58 CET 2011

Dear all

    I am trying to run simulation of transmembrane protein, i am looking for
better ways to setup protein with lipid membrane. initially i used VMD to
insert protein with lipid membrane but it did not come out well, i got
errors while running position restraint.  i read about g_membed tool in
gromacs, is it helpful for setting up transmembrane proteins also?  Is there
any other better ways to insert protein perfectly into the membrane?  Please
help me to overcome this problem.....

Thanks and regards

Mohanalakshmi N
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