[gmx-users] transmembrane protein simulation
itamar.kass at monash.edu
Mon Jan 24 05:46:40 CET 2011
Don't know about g_membed. But try to use the method developed by
Or use the old method of taking a n equilibrated membrane with a
protein, take it out and stuck yours. Just do long PR simulation.
On 24/01/11 3:39 PM, Mohana lakshmi wrote:
> Dear all
> I am trying to run simulation of transmembrane protein, i am
> looking for better ways to setup protein with lipid membrane.
> initially i used VMD to insert protein with lipid membrane but it did
> not come out well, i got errors while running position restraint. i
> read about g_membed tool in gromacs, is it helpful for setting up
> transmembrane proteins also? Is there any other better ways to insert
> protein perfectly into the membrane? Please help me to overcome this
> Thanks and regards
> Mohanalakshmi N
"In theory, there is no difference between theory and practice. But, in practice, there is." - Jan L.A. van de Snepscheut
| Itamar Kass, Ph.D.
| Postdoctoral Research Fellow
| Department of Biochemistry and Molecular Biology
| Building 77 Clayton Campus
| Wellington Road
| Monash University,
| Victoria 3800
| Tel: +61 3 9902 9376
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| E-mail: Itamar.Kass at monash.edu
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