[gmx-users] luck

[Justin A. Lemkul]

Mr Bernard Ramos wrote:
> Hi everyone!
>  
> I have two questions.
>  
> 1. after I installed gromacs 4.5.3 and "which mdrun" was able to give 
> the correct path, I was not able to run "luck". Instead, "luck" gives an 
> error "command not found". Is this ok? What went wrong? Do I need to 
> install again gromacs?
>  

The program is now called g_luck.

> 2. I tried doing "pdb2gmx". The error points the structure file 
> "*.pdb" as the error. Does this in dicate that the program was not 
> installed properly or there is an error with the pdb file.
>  

If the program has given you a fatal error, then the program is correctly 
installed and working.  It is your input that is somehow wrong.  Without the 
actual error message, it's impossible to say what's wrong.

-Justin

>  
> Thanks 
> 
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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