[gmx-users] residue SASA

[ahmet yıldırım]

Dear users,

I want to calculate hydrophilic and hyrophobic SASA value of each residue in
protein. I used a command as the following:

g_sas -f run.xtc -s run.tpr -or protein_protein.xvg
Select a group for calculation of surface and a group for output
select a group: 1 (protein)
select a group: 2 (protein)

But there is SASA value of each residue in the output file. How can I
seperate the residues as a hydrophilic and hyrophobic SASA?

Thanks in advance
-- 
Ahmet YILDIRIM
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110707/8bbf25b6/attachment.html>