[gmx-users] residue SASA

[Justin A. Lemkul]

ahmet yıldırım wrote:
> Dear users,
> 
> I want to calculate hydrophilic and hyrophobic SASA value of each 
> residue in protein. I used a command as the following:
> 
> g_sas -f run.xtc -s run.tpr -or protein_protein.xvg
> Select a group for calculation of surface and a group for output
> select a group: 1 (protein)
> select a group: 2 (protein)
> 
> But there is SASA value of each residue in the output file. How can I 
> seperate the residues as a hydrophilic and hyrophobic SASA?
> 

This is already in the output file.  Check the legends of area.xvg and you will see.

-Justin

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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