[gmx-users] About -chainsep and -ter

[Hsin-Lin Chiang]

> Right.  Even if you somehow force pdb2gmx to write a topology in this case, the
> bonds are not correct and the termini are incomplete.  That will hopefully be
> resolved when the bug is fixed.  For now, you have a workaround.  Just use
> "-chainsep interactive" and you will get a proper topology.
>
> -Justin
I understand now.
Thank you very much     for your help.

Sincerely yours,
Hsin-Lin