[gmx-users] How to exert different lateral pressure profile of a membrane to study its influence on a protein inserted in the double layer membrane?

[Jianguo Li]

Lateral pressure is a function of z-distance, maybe you can try simulations 
using different surface tension, which is the integration of lateral pressure.

Cheers,
Jianguo 





________________________________
From: KONG Xian <xianshine at gmail.com>
To: gmx-users at gromacs.org
Sent: Wednesday, 27 July 2011 10:58:56
Subject: [gmx-users] How to exert different lateral pressure profile of a 
membrane to study its influence on a protein inserted in the double layer 
membrane?

 
Dear all:
 
         I am working on a research to study whether the Lateral pressure 
profile influence the protein function.
 
         To get different lateral pressure profile, I used Parinello-Rahman P 
coupling method and anisotropic pressure coupling with different p_ref 
values(such as 0.9bar, 1bar, 1.1bar, .,2bar) in xy.
 
         I wonder whether this method feasible. 
 
If it is not feasible, could anyone please give me a hint on how to do it.
 
Thank you 
 
KONG Xian

__________ Information from ESET NOD32 Antivirus, version of virus signature 
database 6327 (20110726) __________

The message was checked by ESET NOD32 Antivirus.

http://www.eset.com
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110727/ce7f16d1/attachment.html>