[gmx-users] How to exert different lateral pressure profile of a membrane to study its influence on a protein inserted in the double layer membrane?
ljggmx at yahoo.com.sg
Wed Jul 27 08:06:14 CEST 2011
Lateral pressure is a function of z-distance, maybe you can try simulations
using different surface tension, which is the integration of lateral pressure.
From: KONG Xian <xianshine at gmail.com>
To: gmx-users at gromacs.org
Sent: Wednesday, 27 July 2011 10:58:56
Subject: [gmx-users] How to exert different lateral pressure profile of a
membrane to study its influence on a protein inserted in the double layer
I am working on a research to study whether the Lateral pressure
profile influence the protein function.
To get different lateral pressure profile, I used Parinello-Rahman P
coupling method and anisotropic pressure coupling with different p_ref
values(such as 0.9bar, 1bar, 1.1bar, .,2bar) in xy.
I wonder whether this method feasible.
If it is not feasible, could anyone please give me a hint on how to do it.
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