[gmx-users] g_confrms and superimposed structures

[Justin A. Lemkul]

leila karami wrote:
> Dear Justin
> 
> very thanks for your reply
> 
> as you said I have two choices : 1) copy and paste the two models into 
> separate .pdb files.
> 
> 2) trjconv -sep .no matter which one I choose. the result is the same. 
> because vmd don't open two separate pdb files?

Certainly VMD can open two separate files.  Be sure you're not loading the 
second as data for the first and you are actually loading a new molecule.

-Justin

> 
> is there another way to have 2 structures simultaneously in one figure? 
> (my goal is superposition of averaged md structure and x-ray structure)
> 
> 
> 
> -- 
> 
> Leila Karami
> Ph.D. student of Physical Chemistry
> K.N. Toosi University of Technology
> Theoretical Physical Chemistry Group
> 
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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