[gmx-users] Gromacs to Amber trajectory

Mark Abraham Mark.Abraham at anu.edu.au
Fri Jun 17 03:16:29 CEST 2011


On 17/06/2011 2:57 AM, Raja Pandian wrote:
>
>
> Dear All,
>
> I have created Amber input file (.prmtop and .rst7) using Xleap. And 
> then I have converted this input file into Gromacs input file format 
> (*.gro and *.top) with amb2gmx.pl <http://amb2gmx.pl> script. I did 
> simulation using Gromacs Package (Amber Force Field). Now I would like 
> to convert Gromacs trajectory file to Amber trajectory file format. So 
> that I can easily analyses this trajectory. I tried to convert Gromacs 
> trajectory file to Amber trajectory file using VMD. This VMD converted 
> trajectory is not working fine. Pls help me in this regards
>

You really haven't said what you've done at the critical point, nor why 
you think it is not working. So we are unable to help at this time.

Maek
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