[gmx-users] Minimization error

[Mark Abraham]

On 20/10/2011 4:14 PM, aiswarya pawar wrote:
> Hi,
>
> All the parameters are ok, still i get the complex separated.

Simulation parameters have nothing to do with the phenomena in the FAQ 
Justin pointed out to you. Please read it.

Mark

>
>
> On Wed, Oct 19, 2011 at 7:02 PM, Justin A. Lemkul <jalemkul at vt.edu 
> <mailto:jalemkul at vt.edu>> wrote:
>
>
>
>     aiswarya.pawar at gmail.com <mailto:aiswarya.pawar at gmail.com> wrote:
>
>         Hi Users,
>
>         I performed a simple minimization for a protein complex in
>         vacuum. Didn't get any error while performing the minimization
>         but when visualised the pdb file after the minimization the
>         chains of the protein complex separated.
>
>         What could be the reason.
>
>
>     Please see FAQ #3 under the heading:
>
>     http://www.gromacs.org/Documentation/FAQs#Analysis_and_Visualization
>
>     -Justin
>
>
>         Thanks,
>         Aiswarya Sent from my BlackBerry® on Reliance Mobile, India's
>         No. 1 Network. Go for it!
>
>
>     -- 
>     ========================================
>
>     Justin A. Lemkul
>     Ph.D. Candidate
>     ICTAS Doctoral Scholar
>     MILES-IGERT Trainee
>     Department of Biochemistry
>     Virginia Tech
>     Blacksburg, VA
>     jalemkul[at]vt.edu <http://vt.edu> | (540) 231-9080
>     http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
>     ========================================
>
>
>
>

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