[gmx-users] Minimization error

[aiswarya pawar]

Hi,

All the parameters are ok, still i get the complex separated.


On Wed, Oct 19, 2011 at 7:02 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:

>
>
> aiswarya.pawar at gmail.com wrote:
>
>> Hi Users,
>>
>> I performed a simple minimization for a protein complex in vacuum. Didn't
>> get any error while performing the minimization but when visualised the pdb
>> file after the minimization the chains of the protein complex separated.
>>
>> What could be the reason.
>>
>>
> Please see FAQ #3 under the heading:
>
> http://www.gromacs.org/**Documentation/FAQs#Analysis_**and_Visualization<http://www.gromacs.org/Documentation/FAQs#Analysis_and_Visualization>
>
> -Justin
>
>
>  Thanks,
>> Aiswarya Sent from my BlackBerry® on Reliance Mobile, India's No. 1
>> Network. Go for it!
>>
>>
> --
> ==============================**==========
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin>
>
> ==============================**==========
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20111020/11fd3159/attachment.html>