[gmx-users] regarding micelle and its analysis

[rama david]

Hi Priya,

Check these link ..May be helpfull to you ,
http://www.gromacs.org/Documentation/How-tos/Micelle_Clustering


>From my limited Experience ,
I suggest ,you should have to make the group of
the molecule as per they forming micelle (As u get the 2-3 micelle )
,make 2-3 group by make_ndx command ...
And now use the analysis g_gyrate ,g_mindist command along the -n
<your index > file

Have a nice Day ..