[gmx-users] RE: tutorials for Coarse-Grained MD Simulation

Marzinek, Jan j.marzinek10 at imperial.ac.uk
Tue Aug 7 09:54:16 CEST 2012

Those tutorials show most important things (e.g. how to build topology for given system) in CG Martini ff using Gromacs. You do not have to merge anything. Commands are the same as for atomistic simulations http://bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/index.html


From: gmx-users-bounces at gromacs.org [gmx-users-bounces at gromacs.org] on behalf of J Peterson [think_beyond at aol.com]
Sent: Tuesday, August 07, 2012 5:47 AM
To: gmx-users at gromacs.org
Subject: [gmx-users] RE: tutorials for Coarse-Grained MD Simulation

Dear Jan,

Thanks for the link. The tutorials available here are very helpful start
preparing the systems for simulation but would like to know how to merge the
custom version of Gromacs for CG available in Martini web site with my
existing Gromacs installation.

Moreover how to make use of all the available Martini files and programs
with the recent version of GROMACS that is version 4?


Peterson J

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