[gmx-users] my VMD

rama david ramadavidgroup at gmail.com
Thu Aug 16 08:05:13 CEST 2012


Sorry md.pdb/md.gro

On Thu, Aug 16, 2012 at 11:34 AM, rama david <ramadavidgroup at gmail.com> wrote:
> Hi
> do the following ..
>
> open the trajectory in tthe molecule not as seperate molecule..
>
> As example you havre md.gro and md.xtc files..
>
> file ==> new molecule
>
> load files for md.pdb   open it in vmd ..
> then be sure that load files for : sould have the file name for which
> you want to see treajectory...here md.gro
> through browse open the md.xtc then load it..
>
> With best wishes aned regards..
>
> Rama david
>
>
> On Wed, Aug 15, 2012 at 3:27 PM, Acoot Brett <acootbrett at yahoo.com> wrote:
>> Dear All,
>>
>> I just installed a VMD. And then I load a gro file and a xtc file from a simulation. The bar in the VMD Main window continuously moves, however the protein molecule in the OpenGL Display window does not move.
>>
>> Will you please tell me what is the problem, or how can see the whole simulation?
>>
>> Cheers,
>>
>> Acoot
>> --
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