[gmx-users] Re: RMSF error when fitting to average structure

tdgrant1 tgrant at hwi.buffalo.edu
Thu Aug 16 21:54:41 CEST 2012

Oh okay, thanks.  I didn't realize warnings were just that, only warnings and
didn't stop the program.  The program did not finish however, and the
problem was a Segmentation Fault.  The output literally was:

Select a group: 0
Selected 0: 'System'
Reading frame       0 time    0.000   
WARNING: if there are broken molecules in the trajectory file,
         they can not be made whole without a run input file

Segmentation fault

Could this be related to the input file, or do you think this is something
else entirely?


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