[gmx-users] any alternative methods?

[Albert]

On 08/22/2012 07:44 AM, Mark Abraham wrote:
>
> I don't see how this relates to your claim that you computed a value 
> with GridMAT that doesn't relate to a value computed some other way.
>
> Mark 

HI Mark:

  thanks for kind reply.


here is my parameter for for calculation. The vector values was take 
from the bottom of .gro file.


###### Input file and input file parameters

bilayer            npt.gro
solvent            SOL
ions            NA+,CL-

resname        POPC
atomname        P1,C1

###### Define the size and shape of the grid

box_size        solvent
vectors            6.84452,6.84452,9.80113
grid            20
conserve_ratio        yes

###### Define whether there is a protein embedded in the bilayer

protein            yes
precision        1.3
P_value            5.0

###### Define the desired output files

#top_pbc            yes
#bottom_pbc        yes
#average_pbc        yes

top_area        yes
bottom_area        yes