[gmx-users] Elastic network model -building

[mohan maruthi sena]

Hi all,
            I want to build elastic network model for a protein.  To
build an Elastic network model  , I consider only C-alpha atoms of the
protein. I want to make c-alpha atoms connect(make bond) with all the
other c-alpha atoms , if it falls within certain cut-off distance.
How can i do this?


Please suggest me a way,

Thanks,
Mohan.