[gmx-users] Fwd: How to overcome syntax errors

[Erik Marklund]

17 maj 2012 kl. 09.01 skrev Seera Suryanarayana:

> 
> 
> ---------- Forwarded message ----------
> From: Seera Suryanarayana <palusoori at gmail.com>
> Date: Thu, May 17, 2012 at 12:07 PM
> Subject: How to overcome syntax errors
> To: jalemkul at vt.edu
> 
> 
> Dear Justin,
>                  While i am running gromacs software i am getting the following syntax errors.
> 
> 
> Fatal error:
> Syntax error - File 1AX8.top, line 7934
> Last line read:
> '## #include"ions.itp"'
> 
> 
> I am unable to create    " _b4em.gro files".Please let me know at what position i have to add ## #include"ions.itp" and Add NA ions or CL ions

So if you want to include ions.itp, then you should first of all have a space between the "include" and the filename. Secondly, you should not have three hashes, just one, without trailing spaces.

Erik

> 
> Is there any explanation why is this happening? I would aooreciate any help.I am new in using MD and gromacs in particular. 
> 
> Suryanarayana Seera,
> PhD student,
> Hyderabad,
> India.
> 
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-----------------------------------------------
Erik Marklund, PhD
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,    75124 Uppsala, Sweden
phone:    +46 18 471 6688        fax: +46 18 511 755
erikm at xray.bmc.uu.se
http://www2.icm.uu.se/molbio/elflab/index.html

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