[gmx-users] Orientation of protein

Shima Arasteh shima_arasteh2001 at yahoo.com
Wed Sep 12 10:28:23 CEST 2012

Dear users,

As a matter of fact I don't know the exact orientation of my protein. To insert a protein in a lipid bilayer, I need to set the orientation of protein and bilayer parallel to z-axis. I'd like to know if it is necessary for protein to be in z-direction exactly? Is it acceptable to set the protein's direction approximately?  

Thanks in advance.

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