[gmx-users] dihedraltypes amber forcefield

[Justin Lemkul]

On 9/12/12 3:29 AM, reisingere at rostlab.informatik.tu-muenchen.de wrote:
> Hi everybody,
>   I get the error that something is wrong with the dihedraltype of 4 atoms
> in my protein  when I use the grompp command.
> I looked at the topology file which atoms are involved in this dehedraltype.
> Those are the four atoms: CA CA C OS
> Where can I find out the parameter for this dihedraltype so that I can add
> it to the ffbonded file?
>

Google search, published literature, or derive the parameters yourself in 
accordance with prescribed force field methodology.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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